Tensions rise when the boys struggle to complete their government project on time and Sheldon tries an energy drink to stay awake. Also, Penny and Amy go to a "party" at Bert the geologist's house, and Kooothrappali learns Bernadette's true feelings about her pregnancy when they clean out the future baby room.

Leonard and Penny must separate a quarreling Sheldon and Amy when their cohabitation does not go as planned, and Sheldon threatens to break off their relationship when Amy refuses to adhere to the bathroom schedule. Also, Howard and Bernadette find unexpected guests at their house when they decide to stay home from a planned vacation.