Zach, the Turtles' young friend, is put into military camp by his parents after making numerous false reports of aliens, only to find two real aliens--Wingnut and Screwloose--brainwashing the cadets to be their army and must call in the Turtles to defeat them.

While on a visit to an Egyptian Exhibit, Michelangelo is mistaken for a Pharaoh named "Amun Turt-El", also known as "The Sacred Turtle".