When the team breaks into a chemical plant to stop a hostage situation, it leads to a shooting and the entire Threat Matrix team is put on trial by Homeland Security. Frankie must team up with Homeland Security agent Anders to try to prove that the team did the right thing, while Kilmer becomes uncomfortable about his ex-wife spending more time with her latest interest.

An elusive "sleeper" agent is tracked in an operation launched from Indonesia, where Kilmer's ex-wife flees from killers who ambush an informer.