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Conan leads a group of young detectives against the phantom thief Kaitou Kid, who has his eyes set on a jewel at a hotel on an isolated island.
Conan, Kogoro, and Ran pass by a woman named Kyouko Takahata who passes out upon receiving a phone call that her brother-in-law, Itsurou Soejima was found dead in her home. They head to her house along with the police to discover that the drunk Soejima died when he fired a shotgun toward the ceiling, which caused a chandelier to fall on top of him.
The Detective Boys hear a rumor from a classmate where a warehouse one second, was filled with treasure and how they all disappeared the next. Before heading to the warehouse to investigate, the Detective Boys drop by Conan's house where they run into an unknown person unbeknownst to Conan. During the warehouse investigation, Conan notices that there were recently made footprints from an adult even though the warehouse has been locked up for years and that the footprints lead up to an abacus with an odd number of beads. Conan decides to look through the warehouse by climbing a tree and looking through a window and sees the treasure their classmate was talking about. When they enter the warehouse through the front door, the Detective Boys discover the warehouse is in the same state as when they entered it. While Conan deduces that there might be a mechanism in the roof or in the floor, the Detective Boys prove him wrong declaring that the distance between the window and the roof is two meters from the outside and inside and that the markers they placed on the floors did not change. The marker leaning against the wall however has disappeared causing Conan to wonder what the mechanism in the warehouse is.