Flynn travels to 1882 to save Jesse James and hire him to lead him to a remote cabin. The team follows him to 1882 and team up with Marshal Bass Reeves and his friend Grant to track Flynn and Jesse down. Meanwhile, Connor begins training Jiya so that she can replace Rufus.

After Wyatt is taken into custody, Rufus and Lucy follow Flynn to 1927 to stop him from interfering with Charles Lindbergh. Meanwhile, the NSA takes over the project and assign a new soldier to the team.