Colonel Gascon and D-Squad discover that Abafar, the planet they are trapped on, is Separatist-controlled, but they also discover a Republic Clone Commando named Gregor, who has been stranded on the planet as well. They must work together to get off the planet safely.

Darth Maul and Savage Opress form an alliance with the Mandalorian terrorist group Death Watch and several crime syndicates, including Black Sun, the Pyke Syndicate, and the Hutt Cartel, in order to destroy all of their common enemies.