The fourth and final installment of the Rebuild of Evangelion. Misato and her anti-Nerv group Wille arrive in Paris, a city now red from core-ization. Crew from the flagship Wunder land on a containment tower.

Shinji Ikari is still adrift after losing his will to live, but the place he arrives at teaches him what it means to hope. Finally, the Instrumentality Project is set in motion and he will make one last grueling stand to prevent the Final Impact.

Shinji Ikari has finally woken up fourteen years after causing the Third Impact. He hasn't aged at all since the incident, but everything else has changed. The earth is in ruins. The people he once protected treat him like a prisoner and threaten to kill him if he pilots another Eva. At NERV headquarters, Shinji meets pianist Kaworu. As the boys bond, the organization's true mission comes into focus. Lost in a labyrinth of deception, Shinji careens toward a mental breakdown that could bring about the end of humanity.

Under constant attack by Angels, NERV introduces two new pilots: the mysterious Makinami Mari Illustrous and the intense Asuka Langley Shikinami. Parallel to the incursion, Gendo Ikari and SEELE proceed the secret project that involves both Rei and Shinji.

Scarred by Second Impact, the Fourth Angel attacks Tokyo III and the fate of humanity is left in the hands of the NERV Special Government Agency.  Young Shinji Ikari is forced to pilot EVA-01.  He and EVA-00 pilot Rei Ayanami are tasked with fighting, but EVA-01 is damaged by the Sixth Angel.  Misato Katsuragi devises a plan to focus all of Japan's electricity into EVA-01's positron cannon to defeat the Angel.

With the defeat of the final Angel, Gendo Ikari turns on the Seele organization, each of them wanting to initiate Third Impact under their own control. Through Seele's control of the United Nations, it orders a massive leave-no-survivors assault on Tokyo-3 by the JSSDF, who clear through the personal of NERV quickly and efficiently. Asuka, piloting Eva-02, is able to repulse the JSSDF, motivating Seele to deploy the nine Mass Production model Evangelionsagainst Eva-02. After a titanic battle, Eva-02 is destroyed, killing Asuka. Meanwhile, Misato fights her way through the JSSDF's invasion of Nerv HQ to bring Shinji to Eva-01, dying moments after getting Shinji to safety. Rei merges with embryonic Adam and then Lilith, rejecting Gendo, and instigates Third Impact and Instrumentality using Eva-01, the Mass Production Evangelions, and the Spear of Longinus. After examining his life's meaning with Rei/Lilith, Shinji decides to reject Instrumentality, and return to the world even though that means being hurt. Sometime later, Shinji wakes up on the beach of the Sea of LCL formed by Instrumentality, and finds Asuka alive next to him.

Fifteen years after the Antarctic blast known as the Second Impact, the world once again faces the threat of the Angels--super-powered entities with the capacity to bring about a Third Impact capable of destroying all human life. Summoned by his estranged father, 14-year-old Shinji Ikari reluctantly embraces his destiny as the pilot of the bio-engineered vessel known as "Evangelion Unit-01." Alongside fellow Eva pilots Asuka Langley and Rei Ayunami, Shinji battles against the host of invading Angels. But all is not as it seems. Amidst layers of subterfuge, and the competing agendas of secret government organizations each seeking to manipulate the children and their Evas for their own ends, Shinji, Rei and Asuka must each come to terms with their past and unearth their own identities. Told from the various perspectives of the tale's primary characters, Death & Rebirth is a composition of epic proportions. The first half of the film is an orchestrated retelling of episodes 1 through 24 of the original groundbreaking Neon Genesis Evangelion saga. Supplemented with startling new animated sequences, Death offers a unique insight into the personal worlds of the characters as conceived of by the series' director Hideki Anno. In Rebirth, the second half of the film, we see an alternate vision of episode 25 of the original series. Seele, the secret international organization behind the development of both the Evangelion project and the Human Complementation project, is concerned about the way the projects' director, Ikari Gendo, is proceeding. Convinced that Gendo is implementing his own plans, they set out to wrest control of the projects and capture Eva Unit-01. Using the nine-production model Evangelions under their command, and a force of conventional troops, Seele undertakes a full-scale invasion of Central Dogma - the operation control center beneath Tokyo-3.

The Human Instrumentality Project continues. Shinji must decide whether to accept a world alone, or embrace connections with others.

The Human Instrumentality Project begins, and the souls of humanity merge. The Eva pilots confront the nature of their existence as reality dissolves.

Kaworu Nagisa, the Fifth Child, comes to NERV to pilot Unit 02 in Asuka's place. He's friendly to Shinji, but he's shrouded in mystery.

Despite her struggles, Asuka is ordered to assist Rei in battle against Armisael. When she fails, Rei makes a desperate move in order to save Shinji.

Asuka's synchronization ratio continues to drop, undermining her self-confidence. Determined to show her worth, she ignores orders during battle.

Seele kidnaps Fuyutsuki and interrogates him about NERV and Gendo's true intentions, revealing events from the past. Ryoji goes missing.

After achieving an unheard of synchronization rate, Shinji merges with Unit 01. While he has an out of body experience, NERV works to salvage him.

Distraught after the battle, Shinji vows to never pilot an Eva again and quits NERV once more. Just as he's about to leave, another Angel attacks.

Unit 03 arrives from the United States, but Shinji still doesn't know who its pilot is. During testing, NERV learns Unit 03 is possessed by an Angel.

NERV-02 in Nevada vanishes, along with the Eva Unit 04. With Unit 03 on the way, Gendo orders Ritsuko to assign a pilot to it.

While in battle, Shinji and Unit 01 are engulfed in the spreading shadow of an Angel. As NERV fears them both lost, Shinji has a strange experience.

For the first time in years, Shinji meets his father at his mother's grave. Ritsuko, Misato and Ryoji attend a wedding and Asuka goes on a date.

As Seele reviews NERV and Gendo's actions with the Third through Eleventh Angels, Ritsuko conducts a test in which the Eva pilots switch Units.

An Angel infiltrates NERV, quickly taking over the MAGI supercomputer. Ritsuko proposes writing a program to forcibly evolve Ireul to its extinction.

With Gendo and Fuyutsuki in Antarctica, a newly promoted Misato is in charge when a new Angel appears above the Earth, aiming to bomb Tokyo-3.

Tokyo-3 loses power just as another Angel is detected. The Eva pilots must enter the base from the surface while NERV preps the Units manually.

NERV learns of an Angel in dormant embryonic form inside a volcano. Using equipment designed for magma, Asuka is sent to retrieve it with Unit 02.

Asuka and Shinji face another Angel but it gets the upper hand. They now have six days to learn synchronized moves to destroy it completely.

Shinji and his friends accompany Misato to meet Eva Unit 02 and its pilot Asuka at sea. Misato's old friend Ryoji Kaji is aboard with his own agenda.

Ritsuko tells Shinji about the classified true cause of the Second Impact. Then she and Misato attend the field test for an Eva competitor mecha.

As the Fifth Angel drills toward NERV, Misato leads Operation Yashima: All of Japan's power will be diverted to take out Ramiel with a positron rifle.

Unit 00's pilot Rei Ayanami appears to have recovered, but she has no friends, no records of her past, and no interest in getting to know Shinji.

Stressed out following his last battle, Shinji runs away from home and meets Kensuke. After NERV brings him back in, Misato offers him a choice.

Word gets around school that Shinji is the Eva pilot; his classmate Toji resents him for it. An Angel appears and Shinji must pilot in combat again.

After piloting the Eva Unit 01, Shinji wakes up in the hospital with no memory of the battle. Feeling sorry for him, Misato lets him move in with her.

In the year 2015, an Angel returns to attack Tokyo-3. Misato Katsuragi transports Shinji to the NERV base overseen by his estranged father, Gendo.